miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|166350508|gb|FD650911.1|FD650911 CAATTGAGGGCATGACATTCGTAATTCAGGGTTTCGGAAATGTGGGGTCATGGGCGGCAAGACTCATCCATGAGAGAGGA
GGGAAGGTTGTTGCTGTTAGTGATGTCACAGGTGCAGTTCAGAATAAAGATGGGTTGGACATTACAGAGCTGGTGAAGCA
TAAAGAATTCACCAACAGTTTGAAAGATTTCGATGGTGGAGATTCAATGAATCCGGATGATTTGCTTGTACATGAATGTG
ATGTACTCATCCCTTGTGCTCTTGGTGGAGTACTGAACAAGGAAAATGCCAACGATGTGAAAGCTAAGTTCATTATTGAG
GCGGCAAATCATCCTACTGACCCAGACGCTGATGAGATTCTGTCGAAGAAAGGAGTTATTATACTCCCTGACATATATGC
AAATGCTGGAGGTGTCACTGTGAGCTACTTTGAATGGGTTCAGAACATTCAAGGGTTCATGTGGGATGAGGATAAGGTGA
ACGGTGTGCTTCAAAAGTATATGACTCGTGCTTTTCATAACATCAAGAACATGTGCCAGACTCACGATTGCAGCTTGCGA
ATGGGTGCATTCACCCTTGGGGTTAACCGTGTTGCCCGTGCAACACAGATTAGAGGATGGGAAGCATAAGAACCTGTTGG
AATATCTTGTTGTTGTTTTTCATTACAGAAATACTCTATAGTTGAGCTTGAAATTAATCATGGAAATGTAGCTCATTTGT
ATCGGTGAATTTCAGTTTCATTTAGATTTTATAAAATTTCA




Most similar to sp|Q38946|DHE2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q38946|DHE2_ARATH Glutamate dehydrogenase 2 OS=Arabidopsis
           thaliana GN=GDH2 PE=1 SV=1
          Length = 411

 Score =  374 bits (961), Expect = e-103
 Identities = 174/208 (83%), Positives = 195/208 (93%)
 Frame = +3

Query: 3   IEGMTFVIQGFGNVGSWAARLIHERGGKVVAVSDVTGAVQNKDGLDITELVKHKEFTNSL 182
           I+G+TFVIQGFGNVG+WAA+LIHE+GGKVVAVSD+TGA++N +G+DI  L+KHK+ T SL
Sbjct: 204 IQGLTFVIQGFGNVGTWAAKLIHEKGGKVVAVSDITGAIRNPEGIDINALIKHKDATGSL 263

Query: 183 KDFDGGDSMNPDDLLVHECDVLIPCALGGVLNKENANDVKAKFIIEAANHPTDPDADEIL 362
            DF+GGD+MN D+LL+HECDVLIPCALGGVLNKENA DVKAKFI+EAANHPTDPDADEIL
Sbjct: 264 NDFNGGDAMNSDELLIHECDVLIPCALGGVLNKENAGDVKAKFIVEAANHPTDPDADEIL 323

Query: 363 SKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMWDEDKVNGVLQKYMTRAFHNIKNMCQT 542
           SKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMW+E+KVN  LQKYMTRAFHNIK MC T
Sbjct: 324 SKKGVIILPDIYANAGGVTVSYFEWVQNIQGFMWEEEKVNLELQKYMTRAFHNIKTMCHT 383

Query: 543 HDCSLRMGAFTLGVNRVARATQIRGWEA 626
           H C+LRMGAFTLGVNRVARATQ+RGWEA
Sbjct: 384 HSCNLRMGAFTLGVNRVARATQLRGWEA 411